Difference between revisions of "FGMP"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|fgmp}} |{{#vardefine:url|https://github.com/stajichlab/FGMP}} <!--CONFIGURAT...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:20, 6 December 2019
Description
FGMP (Fungal Genome Mapping Project) is a bioinformatic pipeline designed to provide in an unbiased manner an estimation of genome completeness of a fungal genome assembly. The strategy is based on the screening of the genome using a set of highly diversified fungal proteins. This approach is likely to capture homologs from any fungal genome. FGMP is based on 593 protein markers and 31 highly conserved fungal genomic segments .
Environment Modules
Run module spider fgmp to find out what environment modules are available for this application.
System Variables
- HPC_FGMP_DIR - installation directory
- HPC_FGMP_BIN - executable directory
Citation
If you publish research that uses fgmp you have to cite it as follows: