Dadi: Difference between revisions
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN -executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_EXE - example directory | ||
<!--Configuration--> | <!--Configuration--> | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
RN Gutenkunst, RD Hernandez, SH Williamson, CD Bustamante "Inferring the joint demographic history of multiple populations from multidimensional SNP data" PLoS Genetics 5:e1000695 (2009). | |||
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Latest revision as of 21:21, 6 December 2019
Description
∂a∂i implements methods for demographic history and selection inference from genetic data, based on diffusion approximations to the allele frequency spectrum. One of ∂a∂i's main benefits is speed: fitting a two-population model typically takes around 10 minutes, and run time is independent of the number of SNPs in your data set. ∂a∂i is also flexible, handling up to three simultaneous populations, with arbitrary timecourses for population size and migration, plus the possibility of admixture and population-specific selection.
Environment Modules
Run module spider dadi to find out what environment modules are available for this application.
System Variables
- HPC_DADI_DIR - installation directory
- HPC_DADI_BIN -executable directory
- HPC_DADI_DOC - documentation directory
- HPC_DADI_EXE - example directory
Citation
If you publish research that uses dadi you have to cite it as follows:
RN Gutenkunst, RD Hernandez, SH Williamson, CD Bustamante "Inferring the joint demographic history of multiple populations from multidimensional SNP data" PLoS Genetics 5:e1000695 (2009).