Difference between revisions of "DeTiN"
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Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|detin}} |{{#vardefine:url|https://github.com/broadinstitute/deTiN}} <!--CONFIGURATION: OPTIONAL (|1}}...") |
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:NGS]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|detin}} | |{{#vardefine:app|detin}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:39, 15 August 2022
Description
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Environment Modules
Run module spider detin to find out what environment modules are available for this application.
System Variables
- HPC_DETIN_DIR - installation directory