Difference between revisions of "ISOWN"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|isown}} |{{#vardefine:url|https://github.com/ikalatskaya/ISOWN}} <!--CONFIGU...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_TEST - test datadirectory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_TRAIN - train data directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
ISOWN is a supervised machine learning algorithm for predicting somatic mutations from tumor only samples.
Environment Modules
Run module spider isown to find out what environment modules are available for this application.
System Variables
- HPC_ISOWN_DIR - installation directory
- HPC_ISOWN_BIN - executable directory
- HPC_ISOWN_TEST - test datadirectory
- HPC_ISOWN_TRAIN - train data directory