Difference between revisions of "Wtdbg"
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(Created page with "Category:SoftwareCategory:PhylogeneticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|wtdbg}} |{{#vardefine:url|https://github.com/ruanjue/wtdbg2}...") |
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| − | [[Category:Software]][[Category:Phylogenetics | + | [[Category:Software]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|wtdbg}} | |{{#vardefine:app|wtdbg}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 17:44, 22 August 2022
Description
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
Environment Modules
Run module spider wtdbg to find out what environment modules are available for this application.
System Variables
- HPC_WTDBG_DIR - installation directory
- HPC_WTDBG_BIN - executable directory
- HPC_WTDBG_DOC - documentation directory