Difference between revisions of "Starseqr"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 17:12, 31 May 2022
Description
RNA Fusion Detection and Quantification using STAR.
Post-alignment run times are typically <20 minutes using 4 threads. Development is still ongoing and several features are currently in the works. DNA breakpoint detection is still experimental.
Environment Modules
Run module spider starseqr to find out what environment modules are available for this application.
System Variables
- HPC_STARSEQR_DIR - installation directory
- HPC_STARSEQR_BIN - executable directory