Difference between revisions of "BlobTools"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|blobtools}} |{{#vardefine:url|https://github.com/DRL/blobtools}} <!--CONFIGU...") |
(Updated web address, env variables, citation to reflect most recent version) |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|blobtools}} | |{{#vardefine:app|blobtools}} | ||
| − | |{{#vardefine:url|https://github.com/ | + | |{{#vardefine:url|https://github.com/blobtoolkit/blobtoolkit}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| Line 18: | Line 18: | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | Blobtoolkit is a modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets. | |
<!--Modules--> | <!--Modules--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | |||
<!--Configuration--> | <!--Configuration--> | ||
| Line 61: | Line 60: | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | Challis, R., Richards, E., Rajan, J., Cochrane, G., and Blaxter, M. (2020). ''G3: GENES, GENOMES, GENETICS'' 10(4): 1361-1374. https://doi.org/10.1534/g3.119.400908 | |
|}} | |}} | ||
Latest revision as of 18:20, 28 May 2024
Description
Blobtoolkit is a modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets.
Environment Modules
Run module spider blobtools to find out what environment modules are available for this application.
System Variables
- HPC_BLOBTOOLS_DIR - installation directory
- HPC_BLOBTOOLS_BIN - executable directory
Citation
If you publish research that uses blobtools you have to cite it as follows:
Challis, R., Richards, E., Rajan, J., Cochrane, G., and Blaxter, M. (2020). G3: GENES, GENOMES, GENETICS 10(4): 1361-1374. https://doi.org/10.1534/g3.119.400908