MECAT: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mecat}} |{{#vardefine:url|https://github.com/xiaochuanle..." |
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[[Category:Software | [[Category:Software]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|mecat}} | |{{#vardefine:app|mecat}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 18:29, 18 August 2022
Description
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and error correction tools. MECAT can be used for effectively de novo assemblying large genomes.
Environment Modules
Run module spider mecat to find out what environment modules are available for this application.
System Variables
- HPC_MECAT_DIR - installation directory
- HPC_MECAT_BIN - executable directory
Citation
If you publish research that uses mecat you have to cite it as follows: