Difference between revisions of "MEGA"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - examples directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| Line 36: | Line 36: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | Starting with MEGA7-7.0.25 MEGA requires X11. To execute it in headless environment on HiPerGator use Xvfb by placing the following code into your job script above the mega call: | + | Starting with MEGA7-7.0.25 MEGA requires X11, even for command line execution. To execute it in headless environment on HiPerGator use Xvfb by placing the following code, which fakes a display, into your job script above the mega call: |
<pre> | <pre> | ||
Latest revision as of 20:30, 15 December 2020
Description
mega website
Molecular Evolutionary Genetics Analysis
Software suite for analyzing DNA and protein sequence data from species and populations.
Environment Modules
Run module spider mega to find out what environment modules are available for this application.
System Variables
- HPC_MEGA_DIR - installation directory
- HPC_MEGA_BIN - executable directory
- HPC_MEGA_DOC - documentation directory
- HPC_MEGA_EXE - examples directory
Additional Information
Starting with MEGA7-7.0.25 MEGA requires X11, even for command line execution. To execute it in headless environment on HiPerGator use Xvfb by placing the following code, which fakes a display, into your job script above the mega call:
DISPLAY_ID=$RANDOM
export DISPLAY=:${DISPLAY_ID}
Xvfb :${DISPLAY_ID} -screen 0 1024x768x16 &
Citation
If you publish research that uses mega you have to cite it as follows:
- Citation for MEGA 7
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasets. Kumar S, Stecher G, and Tamura K (2016) Molecular Biology and Evolution 33(7):1870-1874.