Difference between revisions of "Dcmstack"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dcmstack}} |{{#vardefine:url|https://github.com/moloney/dcmstack}} <!--CONFIGURATI...") |
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| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:Imaging]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|dcmstack}} | |{{#vardefine:app|dcmstack}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:29, 15 August 2022
Description
This package provides DICOM to Nifti conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected it into a Nifti header extension or written out as a JSON formatted text file.
Environment Modules
Run module spider dcmstack to find out what environment modules are available for this application.
System Variables
- HPC_DCMSTACK_DIR - installation directory