Difference between revisions of "Nanofilt"
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|nanofilt}} | |{{#vardefine:app|nanofilt}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 13:48, 19 August 2022
Description
Filtering on quality and/or read length, and optional trimming after passing filters. Reads from stdin, writes to stdout.
Environment Modules
Run module spider nanofilt to find out what environment modules are available for this application.
System Variables
- HPC_NANOFILT_DIR - installation directory
- HPC_NANOFILT_BIN - executable directory
Citation
If you publish research that uses nanofilt you have to cite it as follows:
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939