Difference between revisions of "Ensembl Tools"
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Latest revision as of 18:52, 12 August 2022
Description
Ensembl Tools provide a number of ready-made tools for processing sequence data.
Required Modules
Serial
- Ensembl_Tools
Parallel (OpenMP)
- intel
- Ensembl_Tools
Parallel (MPI)
- intel
- openmpi
- Ensembl_Tools
System Variables
- HPC_ENSEMBL_TOOLS_DIR - installation directory
Additional Information
Available tools:
- Variant Effect Predictor - analyse your own variants and predict the functional consequences of known and unknown variants via Ensembl Variant Effect Predictor (VEP) tool.
- ID History converter - convert a set of Ensembl IDs from a previous release into their current equivalents.
- Assembly converter - map (liftover) data's coordinates to the current assembly.
- Region Reporter - A script for sampling a given set of chromosomalregions, producing a simple summary of the features within those regions. Operates in batch and single region mode, and can serialize into GFF3 and textual format.
Citation
If you publish research that uses Ensembl_Tools you have to cite it as follows:
http://www.ensembl.org/info/about/publications.html
Validation
- Validate 4/5/2018