Difference between revisions of "VEP"
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| − | [[Category:Software]][[Category:Biology]][[Category:Genomics]] | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |
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==System Variables== | ==System Variables== | ||
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Latest revision as of 17:28, 22 August 2022
Description
Use Variant Effect Predictor (VEP) to analyse your variation data locally. No limits, powerful, fast and extendable. VEP is the best way to get the most out of the Ensembl.
Environment Modules
Run module spider vep to find out what environment modules are available for this application.
System Variables
- HPC_VEP_DIR - installation directory
Citation
If you publish research that uses vep you have to cite it as follows:
McLaren et. al. (doi:10.1093/bioinformatics/btq330)