Difference between revisions of "ChromEvol"

Latest revision as of 13:34, 15 August 2022

Description

chromEvol is a free, open-source program for analyzing changes in chromosome-number along a phylogeny. Given a phylogeny and chromosome number data, the program infers the location and type of chromosome number transitions along the tree.

Features

Test hypotheses about chromosome numbe evolution
Determine ploidy levels for taxa
Find the chromosome base-number of a phylogeny

Environment Modules

Run module spider chromevol to find out what environment modules are available for this application.

System Variables

HPC_CHROMEVOL_DIR - installation directory

Citation

If you publish research that uses chromevol you have to cite it as follows:

Mayrose et al, 2010

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
+[[Category:Software]][[Category:Biology]][[Category:NGS]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|chromevol}}
@@ Line 25: / Line 25: @@
 *Find the chromosome base-number of a phylogeny
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-===Serial===
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 73: / Line 63: @@
 <!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 __NOTOC____NOEDITSECTION__
-=Validation=
-* Validated 4/5/2018