Difference between revisions of "Proovread"
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|Proovread}} | |{{#vardefine:app|Proovread}} | ||
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Large scale high-accuracy BioPac correction through iterative short read consensus. | Large scale high-accuracy BioPac correction through iterative short read consensus. | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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| − | < | ||
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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Latest revision as of 20:27, 12 August 2022
Description
Large scale high-accuracy BioPac correction through iterative short read consensus.
Environment Modules
Run module spider Proovread to find out what environment modules are available for this application.
System Variables
- HPC_PROOVREAD_DIR - installation directory
- HPC_PROOVREAD_BIN
- HPC_PROOVREAD_CONF
Additional Information
For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.
Citation
proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).