Difference between revisions of "MetaCluster"

Latest revision as of 19:26, 18 August 2022

Description

metacluster website
MetaCluster is an unsupervised binning method for metagenomic sequences. Existing binning methods based on sequence similarity and sequence composition markers rely heavily on the reference genomes of known microorganisms and phylogenetic markers. MetaCluster is an integrated binning method based on the unsupervised top-down separation and bottom-up merging strategy. It can bin metagenomic sequencing datasets with mixed complex species abundance ratios from the exactly equal situation to the extremely unbalance situation with consistently high accuracy.

Environment Modules

Run module spider metacluster to find out what environment modules are available for this application.

System Variables

HPC_METACLUSTER_DIR - installation directory
HPC_METACLUSTER_BIN - executable directory.

Additional Information

Four programs are available

MetaBinNoise
MetaCluster4Fast
MetaCluster5_1
MetaCluster5_2

@@ Line 1: / Line 1: @@
 __NOTOC__
 __NOEDITSECTION__
-[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
+[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 {|<!--Main settings - REQUIRED-->
 |{{#vardefine:app|metacluster}}
@@ Line 20: / Line 20: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-[[Modules|modules documentation]]
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-*{{#var:app}}
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
-* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory.
+* HPC_{{uc:{{#var:app}}}}_BIN - executable directory.
 <!--Additional-->
 {{#if: {{#var: exe}}|==Additional Information==
@@ Line 48: / Line 46: @@
 WRITE CITATION HERE
 |}}
-=Validation=
-* Validated 4/5/2018