Difference between revisions of "Albacore"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|albacore}} | |{{#vardefine:app|albacore}} | ||
| − | |{{#vardefine:url|https:// | + | |{{#vardefine:url|https://community.nanoporetech.com}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| Line 18: | Line 18: | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | Albacore | + | Albacore is the official basecaller for data generated with equipment produced by Oxford Nanopore Technologies such as minION, GridION, and PromethION. |
<!--Modules--> | <!--Modules--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:10, 6 December 2019
Description
Albacore is the official basecaller for data generated with equipment produced by Oxford Nanopore Technologies such as minION, GridION, and PromethION.
Environment Modules
Run module spider albacore to find out what environment modules are available for this application.
System Variables
- HPC_ALBACORE_DIR - installation directory
- HPC_ALBACORE_BIN - executable directory