Difference between revisions of "OCOCO"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_SCP - scripts directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - exampledirectory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:22, 6 December 2019
Description
OCOCO: the first online consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Environment Modules
Run module spider ococo to find out what environment modules are available for this application.
System Variables
- HPC_OCOCO_DIR - installation directory
- HPC_OCOCO_BIN - executable directory
- HPC_OCOCO_SCP - scripts directory
- HPC_OCOCO_EXE - exampledirectory
Citation
If you publish research that uses ococo you have to cite it as follows:
K. Brinda, V. Boeva, G. Kucherov. Ococo: an online consensus caller. arXiv:1712.01146 [q-bio.GN, 2017]