Difference between revisions of "NanoPlot"

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(Created page with "Category:SoftwareCategory:BiologyCategory:Plotting {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|nanoplot}} |{{#vardefine:url|https://github.com/wdecoster/Nan...")
 
 
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[[Category:Software]][[Category:Biology]][[Category:Plotting]]
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[[Category:Software]][[Category:Bioinformatics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|nanoplot}}
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|{{#vardefine:app|tidk}}
|{{#vardefine:url|https://github.com/wdecoster/NanoPlot}}
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|{{#vardefine:url|https://github.com/tolkit/telomeric-identifier}}
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
  
Plotting tool for long read sequencing data and alignments.
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Tidk (Telomeric Identifier) is a tool for identifying and analyzing telomeric sequences in genomic data.
  
Includes: NanoComp, NanoStat, NanoFilt, and NanoLyse.
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Includes: Telomere identification, sequence analysis, and visualization tools.
  
 
<!--Modules-->
 
<!--Modules-->
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 14:41, 6 August 2024

Description

tidk website  

Tidk (Telomeric Identifier) is a tool for identifying and analyzing telomeric sequences in genomic data.

Includes: Telomere identification, sequence analysis, and visualization tools.

Environment Modules

Run module spider tidk to find out what environment modules are available for this application.

System Variables

  • HPC_TIDK_DIR - installation directory
  • HPC_TIDK_BIN - executable directory