Difference between revisions of "MEME"
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(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:Sequence {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|meme}} |{{#vardefine:url|http://me...") |
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Sequencing]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|meme}} | |{{#vardefine:app|meme}} | ||
| Line 17: | Line 17: | ||
{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| + | The MEME Suite allows you to: | ||
| + | |||
| + | * Discover motifs using MEME or GLAM2 on groups of related DNA or protein sequences. | ||
| + | * Search sequence databases using motifs. | ||
| + | * Compare a motif to all motifs in a database of motifs, and. | ||
| + | * Associate motifs with Gene Ontology terms via their putative target genes. | ||
| − | |||
<!--Modules--> | <!--Modules--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 19:50, 12 August 2022
Description
meme website
The MEME Suite allows you to:
- Discover motifs using MEME or GLAM2 on groups of related DNA or protein sequences.
- Search sequence databases using motifs.
- Compare a motif to all motifs in a database of motifs, and.
- Associate motifs with Gene Ontology terms via their putative target genes.
Environment Modules
Run module spider meme to find out what environment modules are available for this application.
System Variables
- HPC_MEME_DIR - installation directory
- HPC_MEME_BIN - executable directory
- HPC_MEME_DOC - documentation directory