Difference between revisions of "Genesum"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genesum}} |{{#vardefine:url|https://github.com/Kingsford-Grou...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - execution directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:21, 6 December 2019
Description
This is a tool to create gene-level summaries of transcript expression estimates. You provide the tool with an annotation file (in GTF/GFF format) and a set of transcript-level estimates, and it aggregates these expression estimates to the gene-level.
Environment Modules
Run module spider genesum to find out what environment modules are available for this application.
System Variables
- HPC_GENESUM_DIR - installation directory
- HPC_GENESUM_BIN - execution directory