Difference between revisions of "Pbtranscript-tofu"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:biologyCategory:bioinformaticsCategory:ngsCategory:pacbio {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pbtranscript-tofu}}...") |
|||
| (4 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:biology]][[Category: | + | [[Category:Software]][[Category:biology]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|pbtranscript-tofu}} | |{{#vardefine:app|pbtranscript-tofu}} | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:11, 24 August 2022
Description
The scripts in this repository are now compatible with SMRTAnalysis 2.3. It is a "beta" version of the RS_IsoSeq protocol that is supported in 2.3, meaning that it extends the existing RS_IsoSeq code base, and is an unofficial, developemental version of RS_IsoSeq. This beta version is only accessible via command line. The command line name of the official RS_IsoSeq is pbtranscript, to differentiate from the official version, in the tutorials we will refer to the beta version provided on this site as pbtranscript-tofu.
Environment Modules
Run module spider pbtranscript-tofu to find out what environment modules are available for this application.
System Variables
- HPC_PBTRANSCRIPT-TOFU_DIR - installation directory
- HPC_PBTRANSCRIPT-TOFU_BIN - executable directory