Difference between revisions of "NCBI GenBank Tools"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ncbigenbanktools}} |{{#vardefine:url|https://www.ncbi.nlm.nih.gov/genbank/}} <!--CONFIGURATION: OPTION...") |
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Biology]][[Category:Healthcare]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|genbank}} |
|{{#vardefine:url|https://www.ncbi.nlm.nih.gov/genbank/}} | |{{#vardefine:url|https://www.ncbi.nlm.nih.gov/genbank/}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:33, 19 August 2022
Description
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42). GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive (ENA), and GenBank at NCBI. These three organizations exchange data on a daily basis.
Environment Modules
Run module spider genbank to find out what environment modules are available for this application.
System Variables
- HPC_GENBANK_DIR - installation directory