DISCOVAR de novo: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:NGSCategory:Assembler {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|discovardenovo}} |{{#vardefine:url|https://s..." |
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[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category: | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|discovardenovo}} | |{{#vardefine:app|discovardenovo}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_EXE - examples directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:41, 15 August 2022
Description
DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not previously possible.
Environment Modules
Run module spider discovardenovo to find out what environment modules are available for this application.
System Variables
- HPC_DISCOVARDENOVO_DIR - installation directory
- HPC_DISCOVARDENOVO_BIN - executable directory
- HPC_DISCOVARDENOVO_DOC - documentation directory
- HPC_DISCOVARDENOVO_EXE - examples directory