Difference between revisions of "Bxh xcede tools"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bxh_xcede_tools}} |{{#vardefine:url|https://www.nitrc.o...") |
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| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|bxh_xcede_tools}} | |{{#vardefine:app|bxh_xcede_tools}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:22, 12 August 2022
Description
A collection of data processing and image analysis tools for data in BXH or XCEDE format. This includes data format encapsulation/conversion, event-related analysis, QA tools, and more. These tools form the basis of the fBIRN QA procedures and are also distributed as part of the fBIRN Data Upload Scripts.
Environment Modules
Run module spider bxh_xcede_tools to find out what environment modules are available for this application.
System Variables
- HPC_BXH_XCEDE_TOOLS_DIR - installation directory
- HPC_BXH_XCEDE_TOOLS_BIN - executable directory