Difference between revisions of "Resistome"
Jump to navigation
Jump to search
| (One intermediate revision by one other user not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software | + | [[Category:Software]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|resistome}} | |{{#vardefine:app|resistome}} | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:46, 21 August 2022
Description
Resistome Analyzer is a simple tool for analyzing the resistome of large metagenomic dataets. This program takes in as input a SAM formatted alignment file, a FASTA formatted reference database, and a CSV formatted annotation database. The alignment file is treated as the sample resistome. This is done by counting each alignment for each target gene found in the alignment file.
Environment Modules
Run module spider resistome to find out what environment modules are available for this application.
System Variables
- HPC_RESISTOME_DIR - installation directory
- HPC_RESISTOME_BIN - executable directory