Difference between revisions of "Taxtastic"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:biologyCategory:taxonomy {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|taxtastic}} |{{#vardefine:url|https://github.com/fhcrc/taxtas...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:biology]][[Category: | + | [[Category:Software]][[Category:biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|taxtastic}} | |{{#vardefine:app|taxtastic}} | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 15:45, 19 August 2022
Description
Taxtastic is a python package used to build and maintain reference packages-- i.e. collections of reference trees, reference alignments, profiles, and associated taxonomic information.
Environment Modules
Run module spider taxtastic to find out what environment modules are available for this application.
System Variables
- HPC_TAXTASTIC_DIR - installation directory
- HPC_TAXTASTIC_BIN - executable directory