Difference between revisions of "REMORA"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]] | + | [[Category:Software]][[Category:Performance Analysis]][[Category:Performance Analysis]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|remora}} | |{{#vardefine:app|remora}} | ||
| Line 29: | Line 29: | ||
* CPU Power and Temperature data | * CPU Power and Temperature data | ||
| − | To use the tool, modify your batch script and include 'remora' before your script, executable, or MPI launcher. | + | To use the tool, modify your batch script and include 'remora' before your script, executable, or MPI launcher. E.g. |
| + | |||
| + | module load remora ncbi_blast | ||
| + | remora blastn -db nt .... | ||
<!--Modules--> | <!--Modules--> | ||
| Line 35: | Line 38: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN and REMORA_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 20:39, 24 August 2022
Description
REMORA: REsource MOnitoring for Remote Applications
Remora is a tool to monitor runtime resource utilization:
- Memory
- CPU utilization
- IO usage (Lustre, DVS)
- NUMA memory
- Network topology
- MPI statistics
- CPU Power and Temperature data
To use the tool, modify your batch script and include 'remora' before your script, executable, or MPI launcher. E.g.
module load remora ncbi_blast remora blastn -db nt ....
Environment Modules
Run module spider remora to find out what environment modules are available for this application.
System Variables
- HPC_REMORA_DIR - installation directory
- HPC_REMORA_BIN and REMORA_BIN - executable directory
Citation
If you publish research that uses remora you have to cite it as follows: