Difference between revisions of "HybPiper"
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 18:36, 10 June 2022
Description
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads.
Environment Modules
Run module spider hybpiper to find out what environment modules are available for this application.
System Variables
- HPC_HYBPIPER_DIR - installation directory
- HPC_HYBPIPER_BIN - executable directory
- HPC_HYBPIPER_DOC - documentation directory
- HPC_HYBPIPER_EXE - example directory
Citation
If you publish research that uses hybpiper you have to cite it as follows: