Difference between revisions of "HybPiper"
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| − | == | + | ==Environment Modules== |
| + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
| + | ==System Variables== | ||
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:36, 10 June 2022
Description
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads.
Environment Modules
Run module spider hybpiper to find out what environment modules are available for this application.
System Variables
- HPC_HYBPIPER_DIR - installation directory
- HPC_HYBPIPER_BIN - executable directory
- HPC_HYBPIPER_DOC - documentation directory
- HPC_HYBPIPER_EXE - example directory
Citation
If you publish research that uses hybpiper you have to cite it as follows: