Difference between revisions of "SparCC"
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__NOTOC__ | __NOTOC__ | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]] |
{|<!--Main settings - REQUIRED--> | {|<!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|SparCC}} | |{{#vardefine:app|SparCC}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
Latest revision as of 15:47, 22 August 2022
Description
SparCC is mainly used for calculating correlations in compositional data. It can also be used to calculate sample diversity, rank abundance plots, etc.
Environment Modules
Run module spider SparCC to find out what environment modules are available for this application.
System Variables
- HPC_SPARCC_DIR - installation directory
- HPC_SPARCC_BIN - executable directory
- HPC_SPARCC_LIB - library directory