Difference between revisions of "Crass"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Assembly]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|crass}} | |{{#vardefine:app|crass}} | ||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | |||
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_MAN - manual directory |
Latest revision as of 14:02, 15 August 2022
Description
Crass is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats
Environment Modules
Run module spider crass to find out what environment modules are available for this application.
System Variables
- HPC_CRASS_DIR - installation directory
- HPC_CRASS_BIN - executable directory
- HPC_CRASS_DOC - documentation directory
- HPC_CRASS_MAN - manual directory
Citation
If you publish research that uses crass you have to cite it as follows: