Difference between revisions of "Slicer"

Latest revision as of 15:42, 8 April 2024

Description

Slicer or 3D Slicer is a free, open-source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform for quickly building custom solutions to imaging challenges. Supported by a knowledgeable user base dedicated to solving complex imaging problems, 3D Slicer is an invaluable tool in the medical field.

Environment Modules

Run module spider slicer to find out what environment modules are available for this application.

System Variables

HPC_SLICER_DIR - installation directory

Additional Information

Log into the Open on Demand Server (https://ood.rc.ufl.edu; select console) server before loading and running Slicer. Do not run large-scale analyses on the OOD server.

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Bioinformatics]][[Category:Imaging]]
+[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|slicer}}
@@ Line 18: / Line 18: @@
 {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
-Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X.
+Slicer or 3D Slicer is a free, open-source software for visualization, processing, segmentation, registration, and analysis of medical, biomedical, and other 3D images and meshes; and planning and navigating image-guided procedures 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform for quickly building custom solutions to imaging challenges. Supported by a knowledgeable user base dedicated to solving complex imaging problems, 3D Slicer is an invaluable tool in the medical field.
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-===Serial===
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 41: / Line 31: @@
 {{#if: {{#var: exe}}|==Additional Information==
-Log into the [[GUI_Programs|gui.rc.ufl.edu]] server before loading and running Slicer. Do not run large-scale analyses on the GUI server.
+Log into the Open on Demand Server (https://ood.rc.ufl.edu; select console) server before loading and running Slicer. Do not run large-scale analyses on the OOD server.
 |}}
 <!--PBS scripts-->