Difference between revisions of "CONSEL"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_CONSEL_BIN - executable directory | * HPC_CONSEL_BIN - executable directory | ||
* HPC_CONSEL_DOC - documentation directory | * HPC_CONSEL_DOC - documentation directory | ||
Latest revision as of 18:43, 10 June 2022
Description
CONSEL is a program package consists of small programs written in C language. It calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection. CONSEL does not estimate the phylogenetic tree by itself, but CONSEL does read the output of the other phylogenetic packages, such as Molphy, PAML, PAUP*, TREE-PUZZLE, and PhyML. CONSEL calculates the p-value using several testing procedures; the bootstrap probability, the Kishino-Hasegawa test, the Shimodaira-Hasegawa test, and the weighted Shimodaira-Hasegawa test. In addition to these conventional tests, CONSEL calculates the p-value based on the approximately unbiased test using the multi-scale bootstrap technique. This newly developed method gives less biased results than the conventional methods.
Environment Modules
Run module spider consel to find out what environment modules are available for this application.
System Variables
- HPC_CONSEL_DIR - installation directory
- HPC_CONSEL_BIN - executable directory
- HPC_CONSEL_DOC - documentation directory