Difference between revisions of "GenomicConsensus"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 15:05, 10 June 2022
Description
The GenomicConsensus package provides the variantCaller tool, which allows you to apply the Quiver or Arrow algorithm to mapped PacBio reads to get consensus and variant calls.
Environment Modules
Run module spider genomicconsensus to find out what environment modules are available for this application.
System Variables
- HPC_GENOMICCONSENSUS_DIR - installation directory