Difference between revisions of "4p"

Latest revision as of 20:36, 11 August 2022

4P (Parallel Processing of Polymorphism Panels) is a software for computing population genetics statistics from large SNPs dataset.

The input data types handled by the program include ped/map, arp and vcf files.

Run module spider 4p to find out what environment modules are available for this application.

If you publish research that uses 4p you have to cite it as follows:

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Biology]][[Category:SNP]]
+[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|4p}}
@@ Line 10: / Line 10: @@
 |{{#vardefine:testing|}}       <!--PROFILING-->
 |{{#vardefine:faq|}}             <!--FAQ-->
-|{{#vardefine:citation|}}       <!--CITATION-->
+|{{#vardefine:citation|1}}       <!--CITATION-->
 |{{#vardefine:installation|}} <!--INSTALLATION-->
 |}
@@ Line 24: / Line 24: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 72: / Line 61: @@
 If you publish research that uses {{#var:app}} you have to cite it as follows:
-WRITE_CITATION_HERE
+[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298444/pdf/ece30005-0172.pdf 4P: fast computing of population genetics statistics from large DNA polymorphism panels]
 |}}