Difference between revisions of "Poretools"

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(Created page with "Category:SoftwareCategory:BiologyCategory:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|poretools}} |{{#vardefine:url|https://github.com/arq5x/pore...")
 
 
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[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
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[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|poretools}}
 
|{{#vardefine:app|poretools}}
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 +
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 +
==System Variables==
 +
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
  
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
==System Variables==
 
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
 
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 18:50, 21 August 2022

Description

poretools website  

Poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore.

Environment Modules

Run module spider poretools to find out what environment modules are available for this application.

System Variables

  • HPC_PORETOOLS_DIR - installation directory