Difference between revisions of "GCTA"
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(Created page with "Category:SoftwareCategory:BiologyCategory:GenomicsCategory:SNP {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gcta}} |{{#vardefine:url|http://cnsgenomics.c...") |
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| − | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |
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|{{#vardefine:app|gcta}} | |{{#vardefine:app|gcta}} | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. | + | [http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. PubMed ID: 21167468] |
| + | Full list of citations covering the methods used by the software is available from the [http://cnsgenomics.com/software/gcta/index.html project website]. | ||
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Latest revision as of 12:56, 15 August 2022
Description
GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.
Environment Modules
Run module spider gcta to find out what environment modules are available for this application.
System Variables
- HPC_GCTA_DIR - installation directory
Citation
If you publish research that uses gcta you have to cite it as follows:
Full list of citations covering the methods used by the software is available from the project website.