TraitRate: Difference between revisions
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Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|traitrate}} |{{#vardefine:url|http://www.tau.ac.il/~itaymay/cp/traitRate/index.html}} <!--CONFIGURATIO..." |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 16:54, 22 August 2022
Description
traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution.
Sample input files are available at http://www.tau.ac.il/~itaymay/cp/traitRate/index.html and in the "$HPC_TRAITRATE_EXE" directory.
Environment Modules
Run module spider traitrate to find out what environment modules are available for this application.
System Variables
- HPC_TRAITRATE_DIR - installation directory
Citation
If you publish research that uses traitrate you have to cite it as follows:
Mayrose I and Otto SP. 2011. A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution. Mol Biol Evol. 28:781-791.