Difference between revisions of "GeneTorrent"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genetorrent}} |{{#vardefine:url|REPLACE}} <!--CONFIGURATION: OPTIONAL (|1}}...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:File Management]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|genetorrent}} | |{{#vardefine:app|genetorrent}} | ||
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://cghub.ucsc.edu/about/about.html}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| − | |{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | + | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> |
|{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | ||
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
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Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF format]. | Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF format]. | ||
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| + | Use '<code>man genetorrent</code>' or '<code>man cgquery</code>' commands to view the software man pages on the command line. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | As GeneTorrent is capable of putting a significant load on a machine and generating a large amount of network traffic please limit its use to the dev nodes and batch jobs. Do not run gtdownload on the gator nodes. | |
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Latest revision as of 13:54, 21 October 2022
Description
GeneTorrent client for downloading BAMs from the CGHub repository.
Software documentation in PDF format.
Use 'man genetorrent' or 'man cgquery' commands to view the software man pages on the command line.
Environment Modules
Run module spider genetorrent to find out what environment modules are available for this application.
System Variables
- HPC_GENETORRENT_DIR - installation directory
Additional Information
As GeneTorrent is capable of putting a significant load on a machine and generating a large amount of network traffic please limit its use to the dev nodes and batch jobs. Do not run gtdownload on the gator nodes.