Difference between revisions of "SOAPsplice"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 00:06, 22 August 2022
Description
SOAPsplice is a tool for genome-wide ab initio detection of splice junction sites from RNA-Seq. The tool performs better than the previous tools by detecting similar numbers of true junctions with lower false positives as the best performing tools in all different situations with different read lengths and coverage. In particular, SOAPsplice performs better by predicting more true junctions with low false positive rate when the coverage is low, which is useful for detecting the junctions for those mRNAs with relatively lower expression level.
Environment Modules
Run module spider soapsplice to find out what environment modules are available for this application.
System Variables
- HPC_SOAPSPLICE_DIR - installation directory