Crux: Difference between revisions
Jump to navigation
Jump to search
Moskalenko (talk | contribs) No edit summary |
No edit summary |
||
| (3 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
[[Category:Software]][[Category: | [[Category:Software]][[Category:Biology]][[Category:Spectroscopy]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|crux}} | |{{#vardefine:app|crux}} | ||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
< | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DOC - html documentation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:39, 12 August 2022
Description
Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide identification.
Environment Modules
Run module spider crux to find out what environment modules are available for this application.
System Variables
- HPC_CRUX_DIR - installation directory
- HPC_CRUX_BIN - executable directory
- HPC_CRUX_DOC - html documentation directory
Citation
If you publish research that uses crux you have to cite it as follows:
Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss and William Stafford Noble. "Rapid and accurate peptide identification from tandem mass spectra." Journal of Proteome Research. 7(7):3022--3027, 2008.