ChromEvol: Difference between revisions
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Moskalenko (talk | contribs) Created page with "Category:SoftwareCategory:BioinformaticsCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|chromevol}} |{{#vardefine:url|http://www.tau.ac.i..." |
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[[Category:Software]][[Category: | [[Category:Software]][[Category:Biology]][[Category:NGS]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|chromevol}} | |{{#vardefine:app|chromevol}} | ||
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
|{{#vardefine:citation|}} <!--CITATION--> | |{{#vardefine:citation|1}} <!--CITATION--> | ||
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
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*Find the chromosome base-number of a phylogeny | *Find the chromosome base-number of a phylogeny | ||
<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
[http://www.tau.ac.il/~itaymay/papers/chromEvol.pdf Mayrose et al, 2010] | |||
|}} | |}} | ||
<!--Installation--> | <!--Installation--> | ||
Latest revision as of 13:34, 15 August 2022
Description
chromEvol is a free, open-source program for analyzing changes in chromosome-number along a phylogeny. Given a phylogeny and chromosome number data, the program infers the location and type of chromosome number transitions along the tree.
- Features
- Test hypotheses about chromosome numbe evolution
- Determine ploidy levels for taxa
- Find the chromosome base-number of a phylogeny
Environment Modules
Run module spider chromevol to find out what environment modules are available for this application.
System Variables
- HPC_CHROMEVOL_DIR - installation directory
Citation
If you publish research that uses chromevol you have to cite it as follows: