Difference between revisions of "GEM"
Jump to navigation
Jump to search
(Created page with "Category:Software Category:Bioinformatics Category:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gem}} |{{#vardefine:url|http://sourceforge.net/projects/g...") |
|||
| (4 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
| − | [[Category:Software]] [[Category: | + | [[Category:Software]] [[Category:Biology]] [[Category:NGS]][[Category:Sequencing]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|gem}} | |{{#vardefine:app|gem}} | ||
| Line 20: | Line 20: | ||
The Genome Mappability Analysis suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variations. | The Genome Mappability Analysis suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variations. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
| − | |||
| − | < | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 17:00, 15 August 2022
Description
The Genome Mappability Analysis suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variations.
Environment Modules
Run module spider gem to find out what environment modules are available for this application.
System Variables
- HPC_GEM_DIR - installation directory