Difference between revisions of "Bamstats"
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Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bamstats}} |{{#vardefine:url|https://github.com/lindenb/jvarkit/wiki/BamStats04}} <!--CONFIGURATION: O...") |
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|bamstats}} | |{{#vardefine:app|bamstats}} | ||
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Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage. | Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:01, 12 August 2022
Description
Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
Environment Modules
Run module spider bamstats to find out what environment modules are available for this application.
System Variables
- HPC_BAMSTATS_DIR - installation directory