Difference between revisions of "AtomEye"
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| − | [[Category:Software]][[Category:Material Science | + | [[Category:Software]][[Category:Material Science]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|AtomEye}} | |{{#vardefine:app|AtomEye}} | ||
|{{#vardefine:url|http://li.mit.edu/Archive/Graphics/A/}} | |{{#vardefine:url|http://li.mit.edu/Archive/Graphics/A/}} | ||
<!--CONFIGURATION: OPTIONAL (1=ON)--> | <!--CONFIGURATION: OPTIONAL (1=ON)--> | ||
| − | |{{#vardefine:exe| | + | |{{#vardefine:exe|}} <!--RUNNING --> |
|{{#vardefine:conf|}} <!--CONFIGS--> | |{{#vardefine:conf|}} <!--CONFIGS--> | ||
| − | |{{#vardefine:pbs| | + | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> |
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
|{{#vardefine:testing|}} <!--TESTING/PROFILING--> | |{{#vardefine:testing|}} <!--TESTING/PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
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[[Modules|modules documentation]] | [[Modules|modules documentation]] | ||
*intel | *intel | ||
| − | *{{#var:app}} | + | *{{lc:{{#var:app}}}} |
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable program directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_INC - include directory | ||
<!--Configuration--> | <!--Configuration--> | ||
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{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | ||
| + | J. Li, AtomEye: an efficient atomistic configuration viewer, Modeling Simulation in Material Science Engineering, 11 (2003) 173-177 | ||
|}} | |}} | ||
<!--Installation--> | <!--Installation--> | ||
Latest revision as of 15:21, 12 August 2022
Description
AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics core library of higher quality than the X-window standard, with area-weighted anti-aliasing. An order-N neighbourlist algorithm is used to compute the bond connectivity. The functionalities of AtomEye include: parallel and perspective projections with full three-dimensional navigation; customizable bond and coordination number calculation; colour-encoding of arbitrary user-defined quantities; local atomic strain invariant; coloured atom tiling and tracing; up to 16 cutting planes; periodic boundary condition translations; high-quality JPEG, PNG and EPS screenshots; and animation scripting.
Required Modules
- intel
- atomeye
System Variables
- HPC_ATOMEYE_DIR - installation directory
- HPC_ATOMEYE_BIN - executable program directory
- HPC_ATOMEYE_LIB - library directory
- HPC_ATOMEYE_INC - include directory
Citation
If you publish research that uses AtomEye you have to cite it as follows:
J. Li, AtomEye: an efficient atomistic configuration viewer, Modeling Simulation in Material Science Engineering, 11 (2003) 173-177