Difference between revisions of "FastML"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|fastml}} |{{#vardefine:url|http://fastml.tau.ac.i...") |
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |
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|{{#vardefine:app|fastml}} | |{{#vardefine:app|fastml}} | ||
| − | |{{#vardefine:url|http://fastml.tau.ac.il/}} | + | |{{#vardefine:url|http://fastml.tau.ac.il/overview.php}} |
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FastML is a tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. It runs algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences). | FastML is a tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. It runs algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences). | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:54, 12 August 2022
Description
FastML is a tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. It runs algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
Environment Modules
Run module spider fastml to find out what environment modules are available for this application.
System Variables
- HPC_FASTML_DIR - installation directory