Difference between revisions of "Mfold"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mfold}} |{{#vardefine:url|http://mfold.rna.albany.edu/...") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|mfold}} | |{{#vardefine:app|mfold}} | ||
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Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling. | Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling. | ||
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 19:51, 12 August 2022
Description
Mfold is an integrated collection of programs that simulate nucleic acid folding and hybridization and its melting pathways for one or two single-stranded sequences. The package predicts folding for single-stranded RNA or DNA through combination of free energy minimization, partition function calculations and stochastic sampling.
Environment Modules
Run module spider mfold to find out what environment modules are available for this application.
System Variables
- HPC_MFOLD_DIR - installation directory