Difference between revisions of "Samtools"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->") |
Moskalenko (talk | contribs) m (Text replace - "<!--Compiler and MPI settings - OPTIONAL --> |{" to "|{") |
||
| Line 5: | Line 5: | ||
|{{#vardefine:app|samtools}} | |{{#vardefine:app|samtools}} | ||
|{{#vardefine:url|http://samtools.sourceforge.net/}} | |{{#vardefine:url|http://samtools.sourceforge.net/}} | ||
| − | |||
| − | |||
| − | |||
|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
Revision as of 18:14, 10 August 2012
Description
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Note: The Samtools 0.1.18 install includes the tabix and bgzip binaries from the Tabix-0.2.6 software.
Required Modules
Serial
- samtools
- HPC_SAMTOOLS_BIN - executable directory