Difference between revisions of "Tophat"
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Revision as of 17:52, 10 August 2012
Description
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
Tophat is a part of the Tuxedo suite.
Available Versions
- 1.3.0.
- 1.3.3 beta.
- 1.4.1 (default).
Required Modules
Serial
- tophat
- HPC_TOPHAT_BIN - executable directory
- HPC_TOPHAT_DOC - documents directory